Sfold Ye Ding

Research Scientist

Wadsworth Center


Research Interests

RNA folding algorithms, rational design of RNA-targeting nucleic acids, target identification of non-coding RNAs. Wadsworth Center page, Sfold


Selected Publications

Potent effect of target structure on microRNA function (2007), D. Long, R. Lee, P. Williams, C. Y. Chan, V. Ambros and Y. Ding, Nat. Struct. Mol. Biol., 14, 287-294. (more ...)

Clustering of RNA secondary structures with application to messenger RNAs (2006), Y. Ding, C. Y. Chan, and C. E. Lawrence, J. Mol. Biol., 359, 554-571. (more ...)

RNA secondary structure prediction by centroids in a Boltzmann weighted ensemble (2005), Y. Ding, C. Y. Chan, and C. E. Lawrence, RNA, 11, 1157-1166. (more ...)

A statistical sampling algorithm for RNA secondary structure prediction (2003), Y. Ding and C. E. Lawrence, Nucleic Acids Res., 31, 7280-7301. (more ...)

Statistical prediction of single-stranded regions in RNA secondary structure and application to predicting effective antisense target sites and beyond (2001), Y. Ding and C. E. Lawrence, Nucleic Acids Res., 29, 1034-1046. (more ...)


Lab Members with RNA-related projects

Dang Long (postdoc)

Steve Carmack (research scientist)

Adam Wolenc (student)